
These Coconut and Pineapple Cottage Cheese Muffins bring tropical flavors to your kitchen, offering a sweet and refreshing treat! The combination of cottage cheese, coconut, and pineapple makes these muffins moist and flavorful without the need for excessive sugar.
I created these muffins when trying to add more protein to my breakfast routine without sacrificing flavor. Now they've become my go-to weekend baking project when I want something that feels indulgent but still provides good nutrition.
Ingredients
- Cottage cheese: Provides moisture and protein while keeping the muffins light
- Eggs: Bind everything together and add structure to these protein-packed treats
- Coconut oil: Enhances the tropical flavor and adds healthy fats
- Honey or maple syrup: Offers natural sweetness that complements the pineapple
- Vanilla extract: Rounds out the flavors with warm aromatic notes
- Whole wheat flour: Adds fiber and nutty depth compared to regular flour
- Baking powder and baking soda: Ensure proper rise and tender texture
- Salt: Balances the sweetness and enhances all the flavors
- Unsweetened coconut: Adds texture and tropical flavor without extra sugar
- Crushed pineapple: Brings natural sweetness and moisture to every bite
Step-by-Step Instructions
- Prepare Your Oven and Pan:
- Preheat your oven to exactly 350°F and line your muffin tin with paper liners. The consistent temperature ensures even baking throughout all the muffins.
- Mix Wet Ingredients:
- In a large bowl, thoroughly combine the cottage cheese, eggs, melted coconut oil, honey, and vanilla extract until the mixture is smooth and uniform. The cottage cheese might look lumpy at first but keep mixing until it integrates well.
- Combine Dry Ingredients:
- In a separate bowl, whisk together the whole wheat flour, baking powder, baking soda, salt, and shredded coconut until evenly distributed. This prevents any pockets of baking powder or soda in the finished muffins.
- Create The Batter:
- Add the dry ingredients to the wet ingredients and mix gently just until combined. Overmixing will develop too much gluten and result in tough muffins. Stop mixing as soon as no dry flour remains visible.
- Add Pineapple:
- Fold in the drained crushed pineapple with a spatula using gentle strokes. This preserves the air bubbles in your batter and keeps the pineapple pieces intact for juicy bursts of flavor.
- Fill Muffin Cups:
- Using an ice cream scoop or large spoon, distribute the batter evenly among the prepared muffin cups. Fill each about three quarters full to allow room for rising.
- Bake To Perfection:
- Bake for 20 to 25 minutes until the tops are golden brown and a toothpick inserted into the center comes out clean or with just a few moist crumbs. Rotate the pan halfway through for even browning.
- Cool Before Enjoying:
- Allow the muffins to cool in the pan for about 5 minutes before transferring to a wire rack. This prevents them from becoming soggy from trapped steam.

The cottage cheese is truly the secret weapon in this recipe. I discovered its magic when experimenting with ways to add protein to baked goods without that chalky protein powder taste. My family never guesses these muffins contain cottage cheese until I tell them the secret behind their incredible moisture and texture.
Storage Solutions
These muffins stay fresh at room temperature in an airtight container for up to 2 days. For longer storage, refrigerate them for up to a week. The cold temperature actually enhances the coconut flavor over time. To freeze, wrap individual muffins tightly in plastic wrap then place in a freezer bag. To reheat, microwave from frozen for about 30 seconds or thaw overnight in the refrigerator and warm slightly before serving.
Smart Substitutions
If cottage cheese isn't your thing, Greek yogurt works wonderfully as a 1:1 substitute. For a dairy-free version, try silken tofu blended until smooth. No pineapple? Mango chunks or peaches can step in with equally delicious results. The honey can be replaced with brown sugar or coconut sugar if you prefer. For extra texture and nutrition, add a quarter cup of chia seeds or chopped nuts to the batter.
Serving Suggestions
These muffins pair beautifully with a tropical fruit salad for brunch. For a more substantial breakfast, serve warm with a dollop of Greek yogurt and a drizzle of honey. They also make an excellent addition to a cheese board with some sharp cheddar to contrast the sweetness. For dessert, split a warm muffin and top with a small scoop of coconut ice cream for a decadent treat that still feels somewhat virtuous.

Frequently Asked Questions
- → Can I use regular cottage cheese instead of low-fat?
Yes, you can use regular cottage cheese. It will make the muffins slightly richer but won't impact the overall texture much.
- → Can I replace honey with sugar?
Yes, you can substitute honey with granulated sugar or brown sugar. Use about 1/4 cup of sugar for a similar level of sweetness.
- → How do I ensure the muffins stay moist?
Drain the crushed pineapple well to avoid excess liquid, and don’t overmix the batter to maintain the muffins’ moisture and texture.
- → What can I use as a substitute for coconut oil?
If you don’t have coconut oil, you can use melted butter or a neutral-tasting vegetable oil like canola or sunflower oil instead.
- → Can I make these muffins gluten-free?
Yes, you can replace the whole wheat flour with a gluten-free all-purpose flour blend. Ensure the blend contains xanthan gum for structure.